FastQCFastQC Report
Sun 21 May 2023
EGAF00007931769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482262
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12360.2562922228995857No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9720.20155019470744118No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8150.16899527642650675No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7270.15074793369579192No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6290.1304270292911322No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5430.11259439889520634No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5030.10430015219942687No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5030.10430015219942687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)