FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482262
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG81561.6911969012694343No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15680.32513447047455535No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9290.19263387950947825No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8200.1700320572634792No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8200.1700320572634792No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6650.13789185131733375No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5150.10678842620816072No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5120.10616635770597727No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5090.10554428920379379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)