FastQCFastQC Report
Sun 21 May 2023
EGAF00007931771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497194
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12420.24980188819655907No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9910.19931857584765703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8610.17317184036814603No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8080.16251201744188387No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6700.13475625208671063No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5630.11323547749972848No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5600.11263209129635514No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5310.10679935799707961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)