FastQCFastQC Report
Wed 31 May 2023
EGAF00007931772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497194
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70371.415342904379377No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15760.31697888550545666No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9510.19127342646934598No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9290.18684859431127487No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8630.17357409783706157No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7020.1411923715893595No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5860.11786143839225735No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.1112241901551507No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5320.10700048673153739No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5030.10116775343226186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)