FastQCFastQC Report
Wed 31 May 2023
EGAF00007931782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498232
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG82621.6582636201608891No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32580.6539122336582154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27790.5577722827919523No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14120.2834021098604666No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12650.25389778255912904No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11990.24065094172995716No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9640.19348415998972365No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9640.19348415998972365No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG9150.18364938422261115No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8070.16197273559305705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7640.153342218083142No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7530.15113441127828No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7270.14591595883042438No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7200.144510990863694No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6390.12825350439152844No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6070.12183079368647538No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5290.10617543634290852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)