FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487518
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG72611.4893809049101778No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43700.8963771594074476No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30440.624387202113563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13530.277528214342855No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12600.2584519956186233No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11090.2274787802706772No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8730.17907031125004613No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7040.1444049245361197No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6170.12655942960054808No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5360.1099446584536366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)