FastQCFastQC Report
Wed 31 May 2023
EGAF00007931800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436941
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61441.4061395016718503No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27940.6394456002068929No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG18440.422024941582502No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8940.20460428295811106No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8470.19384768195248328No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7470.17096129683412634No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6980.15974696812613146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6520.14921923097168727No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6020.1377760384125088No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5770.13205444213291953No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4990.11420306174060113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)