FastQCFastQC Report
Sun 21 May 2023
EGAF00007931802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475573
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28850.6066366257125615No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28640.6022208998408236No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG20000.4205453211178936No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9670.20333366276050155No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9540.20060011817323523No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8270.173895490282249No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7840.1648537658782143No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7190.15118604294188273No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7030.14782168037293958No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6770.14235459119840696No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5430.11417805468350811No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5080.10681851156394498No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4910.10324387633444287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)