FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483560
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43030.8898585490942178No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27220.5629084291504673No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17240.35652245843328645No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG10640.22003474232773595No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9030.1867400115807759No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8870.1834312184630656No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7070.14620729588882456No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6770.1400033087931177No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.13938291008354703No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6290.13007692943998675No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6210.1284225328811316No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6190.1280089337414178No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6140.12697493589213335No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6060.1253205393332782No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5850.12097774836628339No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5640.11663495739928861No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5440.11249896600215072No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5110.10567458019687319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)