FastQCFastQC Report
Wed 31 May 2023
EGAF00007931808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457946
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27170.5933013936140943No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22670.49503653269162734No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17470.38148602673677684No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16690.36445345084354924No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13700.29916190991951014No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12450.2718661152188249No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11770.2570172029016522No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10600.23146833906181077No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9850.21509086224139962No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8390.1832093740309993No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC7680.16770536264101008No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7600.16595843178016623No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7180.156787044760736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6790.1482707568141222No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6450.1408463006555358No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6270.13691570621863713No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6030.13167491363610556No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5590.12206679390146438No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5470.1194463976101986No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5200.11355050595485057No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4870.10634441615386966No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4850.10590768343865871No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4750.10372401986260388No Hit

[OK]Adapter Content

Adapter graph