FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505831
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19570.3868881108512527No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17730.3505123252627854No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16190.3200673742811334No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15120.2989140641834921No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13720.27123683601835397No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12930.25561897155374025No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12470.24652502515662345No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10350.20461379393512855No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9100.17990198307339803No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9030.17851812166514114No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8440.16685414693840434No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7770.1536086163165168No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7640.1510385879868968No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7510.14846855965727684No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7400.14629392030144456No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7060.13957230774705387No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG6550.1294898889154678No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6380.12612908263827247No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6060.11980285905766946No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5970.11802360867562485No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5930.11723283072804949No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5590.11051121817365879No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5570.1101158291998711No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5360.10596424497510037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)