FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505831
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31240.6175975770563686No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27270.5391128657595126No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24610.4865261322457501No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18220.36019935512058376No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17670.34932615834142233No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16760.33133596003408256No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15060.29772789726212906No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13960.2759815037038062No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12350.2441526913138973No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11150.22042935288663604No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10810.21370774033224535No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10370.20500918290891623No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8440.16685414693840434No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8200.16210947925295208No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8190.16191178476605825No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7170.14174694710288616No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6990.13818844633879696No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC6450.12751294404652935No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6220.12296597084797097No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5980.11822130316251872No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5850.11565127483289872No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5830.11525588585911105No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5760.11387202445085415No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5700.11268585752949108No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5510.10892966227850805No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5200.10280113318479886No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5150.10181266075032966No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5150.10181266075032966No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5140.1016149662634358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)