FastQCFastQC Report
Sun 21 May 2023
EGAF00007931811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426330
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG18690.4383927943142636No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT15420.36169164731545983No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT14840.3480871625266812No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13650.3201745127014285No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9990.23432552248258393No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9830.2305725611615415No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9810.23010344099641122No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9640.2261159195928037No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9140.21438791546454622No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9060.21251143480402507No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9040.21204231463889475No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9000.21110407430863415No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8340.19562310885933432No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8050.188820866464945No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGGTTG7660.1796730232449042No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7600.1782656627495133No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6830.1602045363919968No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6440.151056693171956No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6130.14378533061243637No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6070.14237797011704548No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5830.1367485281354819No Hit
CATAGAGTCCTGCAGCGGCATCGGCGGCGGCGGGAAACGGGTCG5620.13182276640161378No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5580.13088452607135317No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5390.12642788450261533No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5350.12548964417235475No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5330.12502052400722447No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5310.12455140384209415No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5010.11751460136513968No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA4930.11563812070461849No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4730.11094691905331551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)