FastQCFastQC Report
Wed 31 May 2023
EGAF00007931812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426330
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57321.3444983932634345No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19930.4674782445523421No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC17670.4144676658926184No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17060.4001595008561443No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14890.34925996293950695No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14340.3363591583984238No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11080.25989257148218514No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10210.2394858442990172No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10010.23479464264771424No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9950.2333872821523233No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9630.22588135951023855No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9590.22494311917997797No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9240.21673351629019774No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9040.21204231463889475No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8020.18811718621724954No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC8020.18811718621724954No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7620.1787347829146436No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6440.151056693171956No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6380.1496493326765651No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6260.14683461168578332No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6190.1451926911078273No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5910.1386250087960031No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5760.13510660755752588No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.1334646869795698No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5650.13252644664930924No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5300.124316843759529No Hit
CCGCACCTGCAGAGCGAAACCGGTCCGCCGC5290.12408228367696385No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5230.12267492318157297No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5150.12079844252105176No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5060.11868740177796544No Hit
GGTCACGGTCAGGACCAGGTTAGCCAGTTCC4780.11211971946614124No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4580.10742851781483827No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4540.10649027748457766No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4320.1013299556681444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)