FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480123
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66581.3867279842873597No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA39580.824372087985787No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37250.7758428569345771No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21080.4390541590384131No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18660.38865040833286474No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG17670.36803069213514034No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15240.3174186614679988No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG13430.27971998841963414No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12490.2601416720298757No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA12270.2555595128748258No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11110.23139903733001752No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10350.2155697602489362No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT9910.20640544193883653No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9550.19890736332148223No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG9200.19161756466572108No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8820.18370292612518044No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8470.17641312746941928No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8390.17474688777667388No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8350.1739137679303012No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8330.17349720800711485No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC7060.1470456528847816No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6930.14433801338407032No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6700.1395475742674273No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6410.13350745538122522No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG6370.13267433553485253No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6100.1270507765718368No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5850.12184377753200741No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5680.11830301818492345No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5550.11559537868421217No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5440.11330429910668724No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5260.10955525979801009No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5160.10747246018207836No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5090.10601450045092611No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5070.10559794052773977No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4940.1028903010270285No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG4910.10226546114224896No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4810.10018266152631722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)