FastQCFastQC Report
Wed 31 May 2023
EGAF00007931816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396728
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55921.4095299550321632No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12450.31381702325018657No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8270.20845516323526447No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8140.2051783589764272No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7910.1993809360569458No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6580.1658567078703797No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5180.13056804662136273No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5130.1293077372910407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5080.1280474279607187No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4800.12098969571091528No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4470.11267165413078985No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4370.11015103547014579No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4280.10788247867556613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)