FastQCFastQC Report
Wed 31 May 2023
EGAF00007931818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432567
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26240.6066112301678122No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14410.3331275848596865No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8990.2078290761893533No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8500.19650135123576232No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8090.18702305076439024No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7390.17084058654497453No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5590.12922853569504839No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5540.12807264539366156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5380.12437379642922368No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4750.10980957863174953No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4590.10611072966731165No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4500.10403012712481535No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4450.10287423682342851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)