FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417455
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60311.4447066150842605No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20880.5001736714136853No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7410.17750416212525902No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7180.17199458624282857No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6910.1655268232504102No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6220.1489980956031189No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6040.14468625360817333No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5080.12168976296846366No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4790.11474290642105138No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4770.11426381286605743No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4250.10180738043621468No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4190.10037009977123283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)