FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422150
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62961.4914130048560938No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21620.5121402345137984No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7530.17837261636858937No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7360.17434561174937818No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6970.16510718938765842No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6520.15444747127798178No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6040.14307710529432666No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5490.1300485609380552No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5010.1186781949544001No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4760.11275612933791307No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4570.10825535946938292No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4330.10257017647755536No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4310.1020964112282364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)