FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393780
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41501.0538879577429021No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24440.6206511249936513No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12750.3237848544872772No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10230.25978973030626235No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA7140.1813195185128752No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6950.17649448930875106No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5850.14856010970592717No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5760.1462745695566052No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4630.11757834323734065No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4590.11656254761541979No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4410.11199146731677585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)