FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454831
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28120.6182516143358743No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23240.5109590155464337No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21310.4685256721727411No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18410.40476572617081946No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17870.3928931845014962No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15630.34364412276208084No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13760.3025299506849797No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13720.3016505031539187No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12780.2809834861739855No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12770.28076362429122026No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12630.27768555793250677No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12110.26625274002871396No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11570.25438019835939063No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG10140.2229399491239603No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC9690.21304616439952423No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9650.21216671686846325No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9500.20886878862698455No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9370.20601058415103632No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8710.19149969988853002No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8560.18820177164705132No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8330.18314494834345063No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8150.1791874344536762No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8040.1767689537432585No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7880.17325116361901455No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7680.1688539259637096No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7240.15918000312203873No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6950.15280400852184658No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6840.15038552781142886No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6590.1448889807422977No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA6530.1435698094457062No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC6500.14291022379741047No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5700.1253212731761907No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5450.11982472610705955No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC5440.1196048642242943No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5220.11476790280345887No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC4980.10949121761709293No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4940.10861177008603196No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT4750.10443439431349227No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC4740.10421453243072702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)