FastQCFastQC Report
Sun 21 May 2023
EGAF00007931831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418935
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10530.2513516416627878No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10230.24419062623079954No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8920.2129208588444508No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7400.1766383806557103No Hit
ACCCTGGTCGGAACGGACCACCTGACGGAAAGAGCGGCGACCGA6750.16112284721973574No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6250.14918782149975532No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5700.13605929320777685No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4940.11791805411340661No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4800.11457624691181209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)