FastQCFastQC Report
Wed 31 May 2023
EGAF00007931833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422609
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10450.24727348447382805No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10430.24680023378583987No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9180.21722206578657813No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7450.1762858812755999No Hit
ACCCTGGTCGGAACGGACCACCTGACGGAAAGAGCGGCGACCGA6950.16445461407589523No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6830.1616151099479661No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5450.12896081247678112No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4980.11783942130905872No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4910.11618304390110007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)