FastQCFastQC Report
Wed 31 May 2023
EGAF00007931835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521661
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT39350.754321292946952No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT38880.7453116104136595No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG38690.7416693983257326No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27320.5237117591692689No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT24980.47885504187585426No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG24830.4759796112801225No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22020.4221132114534151No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18620.3569367846168297No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC18070.3463935390991468No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG16720.3205146637375614No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15110.28965170867670764No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG14240.27297421122146376No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG13920.26683995928390275No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13270.25437976003573204No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12650.24249464690670763No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12640.24230295153365883No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10690.20492235378914658No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT10370.19878810185158557No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG10130.19418741289841487No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9780.18747807484170753No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8880.17022549126731729No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT7360.1410877945639026No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7260.13917084083341483No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT7040.13495354262634163No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6770.12977776755402454No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6490.1244102971086587No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6390.12249334337817087No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6150.11789265442500015No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5600.1073494089073172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)