FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490423
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70101.4293783121917203No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43850.8941260911498848No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT35990.7338562832493581No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT34810.7097954215034776No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT33830.6898126719179157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25630.5226100733448472No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC25150.5128226041600822No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA23730.4838680078218191No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20010.40801512163989045No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19400.3955768795509183No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC17370.354184041123683No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC17010.3468434392351093No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC15630.31870446532890995No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13020.2654851016367503No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12700.25896012218024034No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11610.23673441090650316No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10260.20920715382435162No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT10140.20676028652816036No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9480.1933025163991085No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT9370.19105955471093322No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8350.17026118269330762No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7340.14966671628369796No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT7210.14701594337949078No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT6920.14110268074702859No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6830.13926753027488514No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6760.1378401910187736No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5990.12213945920154642No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5130.10460357691217581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)