FastQCFastQC Report
Wed 31 May 2023
EGAF00007931839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507149
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22640.4464171279052113No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21850.4308398517989782No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18780.37030537376589523No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16750.33027768959418236No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11710.23089861165061942No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10170.2005327822789752No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10070.1985609751769204No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9300.18337806049109828No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8690.1713500371685639No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8050.15873047171541302No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7960.1569558453235637No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7000.1380264971438374No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6680.131716714417262No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6670.13151953370705652No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6630.13073081086623456No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5580.11002683629465897No Hit
CAGACGGCCACGCAGGGAGTCACCTTCCTGCAGAGACACTTCGG5390.10628040280075479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)