FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507149
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28610.564134011897884No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28220.5564439641998703No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23040.4543043563134306No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20450.4032345523702107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19390.38233339708842967No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18790.3705025544761007No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16990.33501002663911394No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13080.25791236894877045No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11350.2238001060832221No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10520.20743410713616708No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8540.16839232651548164No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8020.15813892958479658No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7820.15419531538068693No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7640.15064606259698826No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7530.14847707478472796No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6530.12875900376417976No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5930.11692816115185084No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5880.11594225760082341No Hit
GTAGCGAGCGGTAACAACGGTCGCGGCTACA5580.11002683629465897No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5480.10805502919260415No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5240.10332269214767258No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5110.1007593429150013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)