FastQCFastQC Report
Sun 21 May 2023
EGAF00007931841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474204
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20590.43420131420232644No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20540.4331469156734232No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18040.3804269892282646No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15860.3344552133680863No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11160.2353417516511881No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9730.20518595372455736No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8660.18262182520602946No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8540.18009126873666184No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8230.17355399785746217No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7910.16680584727248188No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7050.14867019257534733No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6990.14740491434066352No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6470.13643916964007052No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6420.13538477111116734No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6090.12842574082040642No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5640.11893615406027785No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5160.1088139281828074No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4830.10185489789204646No Hit
CAGACGGCCACGCAGGGAGTCACCTTCCTGCAGAGACACTTCGG4760.10037873995158203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)