FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474204
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68021.434403758719876No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25430.5362670918001535No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21450.45233696889946096No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20200.4259770056768817No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18160.38295754569763224No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17580.37072652276235546No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15670.33044849895825423No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11800.24883805282114874No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10160.21425378107312465No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10030.2115123448979764No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7920.16701672697826253No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7500.15815977933547587No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7440.15689450110079206No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7310.15415306492564382No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7110.14993547081003114No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6320.133275974053361No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5280.11134448465217502No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5270.11113360494639439No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5050.10649425141922042No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5010.10565073259609789No Hit
GTAGCGAGCGGTAACAACGGTCGCGGCTACA4840.10206577759782709No Hit

[OK]Adapter Content

Adapter graph