FastQCFastQC Report
Sun 21 May 2023
EGAF00007931844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465454
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31720.6814851736154378No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27270.5858795928276478No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13820.29691441044657474No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13800.2964847224430341No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10950.23525418193849446No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7570.16263690934012814No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7570.16263690934012814No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7150.1536134612657749No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6660.1430861051790295No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6440.1383595371400826No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6310.1355665651170685No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4750.10205090084089942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)