FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428502
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15130.3530905339998413No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13040.3043159658531349No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10860.25344105745130713No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8980.20956728323321713No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7170.1673271069913326No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6270.1463237044401193No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6210.14492347760337176No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5830.13605537430397058No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5640.13162132265426998No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5440.1269538998651115No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5320.12415344619161638No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5210.1215863636575792No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4840.11295163149763596No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4810.11225151807926217No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4290.10011621882745005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)