FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428502
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30900.7211168209249899No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12610.2942810068564441No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12200.2847127901386691No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11790.27514457342089416No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7230.16872733382808017No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6720.15682540571572595No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6280.14655707557957723No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6250.14585696216120345No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6030.1407227970931291No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5920.13815571455909192No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5560.1297543535386066No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5380.12555367302836393No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5380.12555367302836393No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5340.12462018847053222No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5180.12088625023920542No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5080.11855253884462617No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4970.11598545631058899No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4950.11551871403167313No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4910.11458522947384144No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4770.11131803352143048No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4500.10501701275606648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)