FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416730
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14100.3383485710172054No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13190.3165118901926907No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10830.259880498164279No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8610.206608595493485No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6940.1665346867276174No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6180.1482974587862645No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5970.14325822474983801No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5880.14109855301994098No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5650.13557939193242627No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5460.13102008494708806No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5430.13030019437045567No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5110.12262136155304394No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT4890.11734216399107336No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4590.11014325822474984No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4220.1012646077796175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)