FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409155
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20970.5125197052461781No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17860.4365093913064731No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17700.4325988928401217No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17360.42428908359912504No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14610.3570773912087106No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13510.33019271425254487No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCC13420.32799305886522223No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG12320.3011083819090565No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12310.30086397575490953No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11230.27446811110703767No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10860.2654250834036001No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9950.2431841233762266No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9700.23707396952255258No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8060.1969913602424509No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7760.18965917561804205No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7280.17792768021898792No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7210.17621683713995917No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7130.17426158790678348No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6770.16546296635749289No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6750.16497415404919896No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6540.15984162481211275No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5990.14639928633402988No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5970.14591047402573595No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5890.1439552247925603No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5310.1297796678520365No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5150.12586916938568513No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4980.12171426476518679No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4800.11731495399054147No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4600.11242683090760225No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4560.1114492062910144No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4490.10973836321198568No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4350.10631667705392822No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4350.10631667705392822No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4280.10460583397489949No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4150.10142855397098899No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4110.10045092935440114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)