FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431726
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13260.3071392503578659No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11050.25594937529822154No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10680.247379124722625No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9940.23023862357143188No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8450.1957259928751106No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8140.18854551266312428No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8010.18553434354196874No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7880.1825231744208132No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6250.14476774620940133No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6030.13967192154283042No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5970.13828215117922016No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5860.1357342388459347No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5680.13156492775510392No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5660.13110167096723385No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5550.12855375863394838No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5520.12785887345214325No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5460.12646910308853299No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5300.12276304878557232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)