FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434518
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13270.3053958639227834No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11070.2547650500094357No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11040.2540746298197083No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10130.23313188406464172No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8530.19630947394584344No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8330.19170667268099364No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8180.18825457173235632No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7910.1820407900248091No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6640.15281300199301295No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6250.14383753952655587No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6130.14107585876764597No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6100.14038543857791852No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5630.12956885560552153No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5460.12565647453039921No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5460.12565647453039921No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5220.12013311301257946No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5070.1166810120639421No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5060.11645087200069962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)