FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434518
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26670.6137835486677192No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12650.2911271800017491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11170.2570664506418607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10860.24993210868134347No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10580.2434881869105538No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8400.1933176531236911No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8180.18825457173235632No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8080.1859531710999314No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7470.17191462724213957No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7010.16132818433298504No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6930.15948706382704514No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6710.15442398243571037No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6420.14774992060167816No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6180.14222655908385845No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5720.13164011617470392No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5670.13048941585849147No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5490.12634689472012667No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5420.12473591427742924No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5160.11875227263312453No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5060.11645087200069962No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4590.10563428902830262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)