FastQCFastQC Report
Wed 31 May 2023
EGAF00007931872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424552
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43911.0342667093783564No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16770.39500461663117825No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16010.37710339369500084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15670.369094951855132No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10360.24402193370894495No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9850.23200927094914167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9090.21410804801296426No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8140.19173151934274246No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7610.17924777176882928No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7490.17642126288416965No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6290.14815617403757372No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5730.13496579924249563No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5080.11965554278392282No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5080.11965554278392282No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5070.11942000037686785No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4740.11164710094405397No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4680.11023384650172417No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4670.10999830409466921No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4600.10834950724528444No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4570.10764288002411955No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4360.10269648947596524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)