FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470618
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53301.1325533659996005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7970.1693517884993774No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7800.16573951697555128No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7460.15851497392789907No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7430.15787751424722385No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6750.1434284281519194No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6520.13854123726674286No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6330.13450399262246662No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6200.13174166733954076No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5500.11686760812378617No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5410.11495522908176058No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5350.11368030972041018No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4980.10581830699208275No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4910.1043309010705073No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4820.1024185220284817No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4710.10008116986600599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)