FastQCFastQC Report
Wed 31 May 2023
EGAF00007931878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478500
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50651.058516196447231No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8460.17680250783699059No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8060.16844305120167188No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7660.16008359456635318No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7530.1573667711598746No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7320.15297805642633228No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6650.13897596656217345No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6210.1297805642633229No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6160.12873563218390804No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5690.11891327063740856No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5540.11577847439916404No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5450.11389759665621733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5380.11243469174503656No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5310.1109717868338558No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5090.10637408568443052No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4930.10303030303030303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4850.1013584117032393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)