FastQCFastQC Report
Wed 31 May 2023
EGAF00007931883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485704
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT29110.5993362212376262No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24850.5116284815443151No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20280.41753825375125586No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19000.3911847545006835No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18110.3728608370530199No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14410.2966827532818342No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13970.28762373791444995No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13480.2775352889825902No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11550.23779915339383656No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11480.23635794640357088No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9350.19250407655691532No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8270.1702683115642449No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7360.1515326206907911No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7000.14412069902656763No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6870.14144417175893137No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6730.13856175777840002No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6570.13526757037207846No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6440.13259104310444222No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6420.132179269678652No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6280.12929685569812066No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5860.12064961375652661No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5770.11879663334047075No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5690.11714953963730998No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5590.11509067250835901No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5560.11447301236967372No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5540.11406123894388352No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5520.11364946551809332No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5320.10953173126019139No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5190.10685520399255513No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4930.10150214945728263No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4900.10088448931859734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)