FastQCFastQC Report
Wed 31 May 2023
EGAF00007931885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459837
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT29310.6373997742678384No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21950.477343058518562No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17640.3836141937251678No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17600.3827443202700087No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17240.3749154591735767No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12980.28227393619913144No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12400.2696607710993243No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11530.2507410234496137No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10780.23443089616538032No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10210.22203519942936303No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8810.19158962849879413No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7970.17332228594045282No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7010.15244532301663416No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6940.1509230444701057No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6640.1443989935564124No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6320.1374400059151395No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5840.12700152445323018No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5760.12526177754291196No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5730.12460937245154262No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5630.12243468881364483No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5520.12004253681195728No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5390.11721544808269016No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5350.11634557462753105No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5260.11438835935342308No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5120.11134380226036618No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4980.1082992451673093No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4940.10742937171215018No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4940.10742937171215018No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4700.10221013098119551No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4650.10112278916224661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)