FastQCFastQC Report
Sun 21 May 2023
EGAF00007931886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459837
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA56351.225434229955397No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48811.0614630836579049No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24650.536059516741802No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23600.5132253385438754No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22220.483214704340886No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18950.4121025493816287No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14230.30945748167285364No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13690.29771419002820565No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11600.2522633019961421No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9900.2152936801518799No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8740.1900673499522657No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8480.1844131724937315No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7740.16832051357328792No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7480.1626663361147537No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7050.15331519647179326No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6460.1404845630081964No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6140.1335255753669235No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6010.13069848663765637No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5950.12939367645491773No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5900.12830633463596886No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5860.12743646118080973No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5840.12700152445323018No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5690.1237394989963835No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5580.12134734699469595No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5520.12004253681195728No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5450.11852025826542884No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5260.11438835935342308No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5250.11417089098963329No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5240.11395342262584351No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5160.11221367571552529No Hit
TTCAAAGCATACGCGCACATGTATGACGAAA4960.10786430843972973No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4790.10416734625530351No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4720.10264506770877506No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4650.10112278916224661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)