FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435521
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46461.0667683073835705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10580.24292743633487246No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9060.20802670824139366No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9040.2075674881349005No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7330.1683041690297368No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5490.12605591923236767No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5260.12077488800769653No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4670.10722789486614882No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4590.10539101444017623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)