FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477843
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51671.0813175038663327No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33270.6962537904709287No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16900.3536726498033873No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15350.32123521742497013No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12800.2678704093185419No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11200.23438660815372414No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10160.2126221373965926No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9820.20550682964906886No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7140.14942146269799914No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7120.14900291518343892No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6960.14565453506695714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6560.13728358477575273No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6260.13100537205734938No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA5820.12179732673702451No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5110.10693888997013662No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4850.10149777228085374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)