FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447356
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21580.4823898640009299No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12060.26958395550747055No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10060.2248768318743909No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9960.22264147569273687No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9480.21191176602079775No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7990.17860495891415337No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7820.1748048534053416No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7070.15803968204293672No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7020.15692200395210973No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6910.15446311215229033No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6260.13993329697153944No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6000.1341213708992391No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5860.1309918722449235No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5610.12540348179078856No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5560.12428580369996155No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5510.12316812560913455No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5480.12249751875463837No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5440.12160337628197677No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5390.12048569819114979No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5050.11288548717352621No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4840.10819123919205285No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4500.1005910281744293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)