FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424167
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45191.0653822668901636No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36010.8489580754749898No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28430.6702548760276024No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20070.47316269299591907No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC17430.4109230562490717No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16530.3897049982671919No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13950.3288798987191366No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13090.30860486553645144No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12750.30058915474329684No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12020.2833789521579944No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11320.2668760181720879No Hit
GTTCCGGAACAGTGGATGTTCCAGGGTGCAC9550.2251471708077243No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8470.19968550122946857No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8440.19897823263007258No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8200.19332008383490465No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7530.17752441844839414No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6870.16196450926168232No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6840.16125724066228633No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6420.15135548027074242No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6190.14593308767537314No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6130.14451855047658116No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5890.13886040168141323No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5450.12848712889027197No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5190.12235746769550672No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4540.10703331470859356No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4430.10443999651080825No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC4390.1034969717116136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)