FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431776
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44741.0361854294819535No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36120.8365448751204329No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29890.692257096272141No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20270.46945638479211443No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17190.3981231008671163No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC16980.3932594678722301No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14060.3256318090861928No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13080.3029348551100571No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13030.3017768472541318No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12900.298766026828726No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11220.2598569628696361No Hit
GTTCCGGAACAGTGGATGTTCCAGGGTGCAC9260.21446305491736456No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8750.20265137478692655No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8490.19662973393611505No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7700.17833320981249537No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7590.17578559252945972No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6840.1584154746905803No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6590.15262543541095383No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6320.14637219298895723No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6220.14405617727710665No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5880.13618172385681465No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5570.12900207515007783No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5360.12413844215519158No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4850.11232676202475357No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4740.10977914474171793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)