FastQCFastQC Report
Wed 31 May 2023
EGAF00007931905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446284
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25130.5630943524751055No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20910.46853573061100107No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15820.3544827957085622No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14520.32535336243289026No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13180.29532763890258223No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11610.2601482464081168No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11600.2599241738444578No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11210.2511853438617562No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10480.23482804671464808No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6080.13623611870468133No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5910.13242688512247808No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5410.1212232569395273No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5340.11965474899391418No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4920.11024370132023553No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4740.10621039517437326No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4720.10576225004705524No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4640.10396966953778311No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4590.10284930671948804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)