FastQCFastQC Report
Wed 31 May 2023
EGAF00007931915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499622
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8990.17993603163991978No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7650.15311575551116643No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7110.14230758453390763No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6440.12889744646953097No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5920.11848957812105952No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5840.11688836760591008No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5710.11428640051879221No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5360.10728110451501335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)